Defining a High-Quality Genome Assembly and How Hi-C Can Get You There – Arima Genomics
Modern technologies and algorithms for scaffolding assembled genomes | PLOS Computational Biology
De novo assembly of large eukaryotic genomes with long nanopore reads, and scaffolding using Pore-C
marinetics - Alexander Jueterbock Website
Frontiers | Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins
Long walk to genomics: History and current approaches to genome sequencing and assembly - ScienceDirect
GAAP: A Genome Assembly + Annotation Pipeline
Hybrid genome assembly - Wikipedia
Genome assembly and scaffolding. Top: Reads, Contigs, and Scaffolds.... | Download Scientific Diagram
Scaffold
Current challenges and solutions of de novo assembly | SpringerLink
Whole Genome de novo Assembly |Supporting de novo assembly training |Course |WGS sequencing | data analysis| Workshop
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds | Science
Use of pairwise linkage information for scaffolding. (a) Paired-end... | Download Scientific Diagram
An introduction to get started in genome assembly and annotation
Comparison of the sequence assembly scaffold to the genome map. The... | Download Scientific Diagram
What is the exact definition for scaffold?
Genomes vs. genNNNes: the difference between contigs and scaffolds in genome assemblies - PacBio
The changing face of genome assemblies: Guidance on achieving high‐quality reference genomes - Whibley - 2021 - Molecular Ecology Resources - Wiley Online Library
Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise - Peona - 2021 - Molecular Ecology Resources - Wiley Online Library
Integrating Hi-C links with assembly graphs for chromosome-scale assembly | PLOS Computational Biology